Overlapping communication and computation by using a hybrid MPI/SMPSs approach

A previous version of this document was submitted for publication by october 2008.Communication overhead is one of the dominant factors that affect performance in high-performance computing systems. To reduce the negative impact of communication, programmers overlap communication and computation by using asynchronous communication primitives. This increases code complexity, requiring more effort to write parallel code and making less readable code. This paper presents the hybrid use of MPI and SMPSs (SMP superscalar), a task-based shared-memory programming model, enhanced with a restart mechanism allowing the programmer to introduce the asynchronism that is necessary to enable the effective communication/computation overlap in a productive way. We demonstrate the hybrid use of MPI/SMPSs with the high-performance LINPACK benchmark, which uses the lookahead technique to overlap communication and computation. MPI/SMPSs improves the performance of a pure MPI with look-ahead by 7,6% on a 1024 processors machine. In addition to better performance, hybrid MPI/SMPSs substantially reduces code complexity, it is less sensitive to network bandwidth and operating system noise, and improves the use of main memory.Postprint (published version

Mechanisms and therapeutic significance of autophagy modulation by antipsychotic drugs

In this review we analyze the ability of antipsychotic medications to modulate macroautophagy, a process of controlled lysosomal digestion of cellular macromolecules and organelles. We focus on its molecular mechanisms, consequences for the function/survival of neuronal and other cells, and the contribution to the beneficial and side-effects of antipsychotics in the treatment of schizophrenia, neurodegeneration, and cancer. A wide range of antipsychotics was able to induce neuronal autophagy as a part of the adaptive stress response apparently independent of mammalian target of rapamycin and dopamine receptor blockade. Autophagy induction by antipsychotics could contribute to reducing neuronal dysfunction in schizophrenia, but also to the adverse effects associated with their long-term use, such as brain volume loss and weight gain. In neurodegenerative diseases, antipsychotic-stimulated autophagy might help to increase the clearance and reduce neurotoxicity of aggregated proteotoxins. However, the possibility that some antipsychotics might block autophagic flux and potentially contribute to proteotoxin-mediated neurodegeneration must be considered. Finally, the anticancer effects of autophagy induction by antipsychotics make plausible their repurposing as adjuncts to standard cancer therapy

Kinetic phenomena in transport of electrons and positrons in gases caused by the properties of scattering cross sections

Collisions of electrons, atoms, molecules, photons and ions are the basic processes in plasmas and ionized gases in general. This is especially valid for low temperature collisional plasmas. Kinetic phenomena in transport are very sensitivitive to the shape of the cross sections and may at the same time affect the macroscopic applications. We will show how transport theory or simulation codes, phenomenology, kinetic phenomena and transport data may be used to improve our knowledge of the cross sections, our understanding of the plasma models, application of the swarm physics in ionized gases and similar applications to model and improve gas filled traps of positrons. Swarm techniques could also be a starting point in applying atomic and molecular data in models of electron or positron therapy/diagnostics in radiation related medicine

Search for dark matter produced in association with bottom or top quarks in √s = 13 TeV pp collisions with the ATLAS detector

A search for weakly interacting massive particle dark matter produced in association with bottom or top quarks is presented. Final states containing third-generation quarks and miss- ing transverse momentum are considered. The analysis uses 36.1 fb−1 of proton–proton collision data recorded by the ATLAS experiment at √s = 13 TeV in 2015 and 2016. No significant excess of events above the estimated backgrounds is observed. The results are in- terpreted in the framework of simplified models of spin-0 dark-matter mediators. For colour- neutral spin-0 mediators produced in association with top quarks and decaying into a pair of dark-matter particles, mediator masses below 50 GeV are excluded assuming a dark-matter candidate mass of 1 GeV and unitary couplings. For scalar and pseudoscalar mediators produced in association with bottom quarks, the search sets limits on the production cross- section of 300 times the predicted rate for mediators with masses between 10 and 50 GeV and assuming a dark-matter mass of 1 GeV and unitary coupling. Constraints on colour- charged scalar simplified models are also presented. Assuming a dark-matter particle mass of 35 GeV, mediator particles with mass below 1.1 TeV are excluded for couplings yielding a dark-matter relic density consistent with measurements